STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2988TIGRFAM: polymorphic outer membrane protein; KEGG: rrs:RoseRS_2283 polymorphic outer membrane protein. (575 aa)    
Predicted Functional Partners:
Rcas_2969
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Proprotein convertase P; KEGG: rrs:RoseRS_3112 conserved repeat domain.
 
 
 0.827
Rcas_3649
PFAM: Polymorphic membrane protein Chlamydia; Fibronectin type III domain protein; KEGG: rba:RB4375 probable extracellular nuclease.
  
     0.564
Rcas_0423
SMART: Integrin alpha beta-propellor repeat protein; KEGG: rrs:RoseRS_4621 integrin alpha beta-propellor repeat protein.
  
     0.486
Rcas_0482
KEGG: rrs:RoseRS_4252 hypothetical protein.
  
     0.474
Rcas_2307
PFAM: Rare lipoprotein A; KEGG: rrs:RoseRS_1550 rare lipoprotein A.
  
     0.466
Rcas_2401
TIGRFAM: polymorphic outer membrane protein; SMART: Parallel beta-helix repeat; KEGG: rba:RB4375 probable extracellular nuclease.
 
 
0.457
Rcas_2874
TIGRFAM: polymorphic outer membrane protein; PFAM: Polymorphic membrane protein Chlamydia; KEGG: rba:RB1661 hypothetical protein.
 
 
0.436
Rcas_2197
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Cna B domain protein; KEGG: rrs:RoseRS_1068 conserved repeat domain.
 
   
 0.405
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.