STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3020KEGG: rrs:RoseRS_2043 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Rcas_3021
PFAM: asparagine synthase; KEGG: rrs:RoseRS_2044 asparagine synthase.
       0.789
Rcas_3019
KEGG: rrs:RoseRS_2042 hypothetical protein.
       0.761
Rcas_3017
KEGG: rrs:RoseRS_2040 hypothetical protein.
       0.756
Rcas_3018
KEGG: rrs:RoseRS_2041 hypothetical protein.
       0.756
Rcas_3022
KEGG: rrs:RoseRS_2045 hypothetical protein.
       0.642
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.