STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3056PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2422 methyltransferase type 11. (223 aa)    
Predicted Functional Partners:
Rcas_0202
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_3870 glycosyl transferase, family 2.
 
    0.880
Rcas_3057
PFAM: SNARE associated Golgi protein; KEGG: rrs:RoseRS_2421 hypothetical protein.
       0.778
Rcas_3703
SMART: Dystroglycan-type cadherin domain protein; PA14-related domain protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
    0.662
Rcas_3055
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_2423 methyltransferase type 11.
 
     0.547
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.519
Rcas_2121
KEGG: rrs:RoseRS_3491 response regulator receiver and SARP domain protein.
  
     0.518
Rcas_3733
TIGRFAM: conserved repeat domain; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: rrs:RoseRS_3245 hypothetical protein.
  
     0.509
Rcas_2727
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_2659 glycosyl transferase, family 39.
  
     0.490
Rcas_2574
SMART: LamG domain protein jellyroll fold domain protein; KEGG: ana:alr7304 similar to hlyA.
  
     0.475
Rcas_1796
KEGG: rrs:RoseRS_2621 hypothetical protein.
  
     0.474
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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