STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily. (214 aa)    
Predicted Functional Partners:
Rcas_0448
TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rrs:RoseRS_4218 histidinol-phosphate phosphatase family protein.
  
 0.995
Rcas_3581
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_1374 GHMP kinase.
 
 0.985
Rcas_0447
PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rrs:RoseRS_4217 GHMP kinase.
 
 0.984
Rcas_3592
PFAM: GHMP kinase; KEGG: rrs:RoseRS_0952 GHMP kinase.
 
 0.976
Rcas_2898
PFAM: sugar isomerase (SIS); KEGG: rrs:RoseRS_3171 sugar isomerase (SIS).
  
  
 
0.916
Rcas_2209
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2637 glycosyl transferase, group 1.
 
    0.902
Rcas_2566
PFAM: PfkB domain protein; KEGG: rrs:RoseRS_2788 PfkB domain protein.
 
   
 0.797
Rcas_3097
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2380 glycosyl transferase, group 1.
 
    0.778
Rcas_3099
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_2382 glycosyl transferase, family 2.
   
 
 0.762
Rcas_3098
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2379 glycosyl transferase, group 1.
  
    0.738
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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