STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3114Multi-sensor signal transduction histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2364 multi-sensor signal transduction histidine kinase. (644 aa)    
Predicted Functional Partners:
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
0.930
Rcas_1114
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_3770 response regulator receiver protein.
 
   
 0.793
Rcas_3134
PFAM: response regulator receiver; KEGG: rrs:RoseRS_2347 response regulator receiver protein.
 
 
   0.788
Rcas_3423
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: rrs:RoseRS_1615 multi-sensor signal transduction histidine kinase.
  
 
   0.781
Rcas_0846
PFAM: response regulator receiver; KEGG: rrs:RoseRS_0337 response regulator receiver protein.
 
 
 
 0.779
Rcas_3177
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; GAF domain protein; PAS fold-4 domain protein; KEGG: rrs:RoseRS_2694 putative PAS/PAC sensor protein.
 
 
 
 0.767
Rcas_4302
PFAM: response regulator receiver; KEGG: rrs:RoseRS_3612 response regulator receiver protein.
 
 
 
 0.765
Rcas_4207
PFAM: response regulator receiver; KEGG: rrs:RoseRS_0035 response regulator receiver protein.
  
 
   0.758
Rcas_3308
PFAM: response regulator receiver; KEGG: rrs:RoseRS_3877 response regulator receiver protein.
  
 
   0.748
Rcas_0674
PFAM: response regulator receiver; KEGG: rrs:RoseRS_0161 response regulator receiver protein.
  
 
   0.747
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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