STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3149PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2318 ABC transporter related. (563 aa)    
Predicted Functional Partners:
Rcas_1126
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_3757 protein of unknown function DUF214.
 
 0.984
Rcas_2537
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1075 protein of unknown function DUF214.
 
 
 0.984
Rcas_4045
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_1203 protein of unknown function DUF214.
 
 
 0.984
Rcas_0266
PFAM: protein of unknown function DUF214; KEGG: rrs:RoseRS_0269 protein of unknown function DUF214.
 
 0.982
Rcas_0268
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_0267 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.903
Rcas_1203
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_4067 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.902
Rcas_0535
Hypothetical protein; KEGG: rsq:Rsph17025_3864 ABC transporter related.
 
 
 0.900
Rcas_4169
PFAM: secretion protein HlyD family protein; KEGG: rrs:RoseRS_4302 secretion protein HlyD family protein.
 
 
 0.877
Rcas_2358
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2479 ABC-2 type transporter.
    
 0.858
Rcas_1766
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_2479 ABC-2 type transporter.
    
 0.843
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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