STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3205PFAM: PspC domain protein; KEGG: rrs:RoseRS_3932 phage shock protein C, PspC. (96 aa)    
Predicted Functional Partners:
Rcas_1113
KEGG: rrs:RoseRS_3771 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.878
Rcas_0896
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: rrs:RoseRS_4182 phage shock protein A, PspA.
  
 
 0.875
Rcas_2496
KEGG: ava:Ava_2329 hypothetical protein.
  
 
 0.875
Rcas_3135
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2344 PAS/PAC sensor signal transduction histidine kinase.
  
 
 0.838
Rcas_1341
PFAM: membrane protein of unknown function; KEGG: rrs:RoseRS_3547 membrane protein of unknown function.
  
    0.779
Rcas_3130
PFAM: PspC domain protein; KEGG: rrs:RoseRS_2350 phage shock protein C, PspC.
  
     0.769
Rcas_1275
PFAM: PspC domain protein; KEGG: rrs:RoseRS_0522 phage shock protein C, PspC.
  
     0.767
Rcas_0592
KEGG: rrs:RoseRS_4160 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.636
Rcas_3204
KEGG: rrs:RoseRS_3931 hypothetical protein.
       0.547
Rcas_4226
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: two-component sensor, putative.
  
 
 0.446
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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