STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3209KEGG: rrs:RoseRS_3908 hypothetical protein. (1143 aa)    
Predicted Functional Partners:
Rcas_1395
KEGG: rrs:RoseRS_2211 type IV secretory pathway VirB4 components-like protein.
  
 
 0.983
Rcas_0063
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_4013 peptidoglycan-binding LysM.
 
 
 
 0.893
Rcas_2807
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1673 FHA domain containing protein.
  
 
 0.889
Rcas_3601
KEGG: mlo:mll3244 hypothetical protein.
  
 
 0.889
Rcas_1258
PFAM: Peptidoglycan-binding LysM; polysaccharide deacetylase; KEGG: rrs:RoseRS_0503 polysaccharide deacetylase.
   
 
 0.886
Rcas_1069
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_0425 peptidoglycan-binding LysM.
   
 
 0.873
Rcas_0051
KEGG: rrs:RoseRS_3313 hypothetical protein.
   
   0.841
Rcas_0620
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_3507 protein of unknown function DUF6, transmembrane.
   
 
 0.841
Rcas_0742
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_4399 protein of unknown function DUF6, transmembrane.
   
 
 0.841
Rcas_2761
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_2519 protein of unknown function DUF6, transmembrane.
   
 
 0.841
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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