STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3209KEGG: rrs:RoseRS_3908 hypothetical protein. (1143 aa)    
Predicted Functional Partners:
Rcas_0063
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_4013 peptidoglycan-binding LysM.
 
 
 
 0.930
Rcas_1258
PFAM: Peptidoglycan-binding LysM; polysaccharide deacetylase; KEGG: rrs:RoseRS_0503 polysaccharide deacetylase.
   
 
 0.924
Rcas_1069
PFAM: Peptidoglycan-binding LysM; KEGG: rrs:RoseRS_0425 peptidoglycan-binding LysM.
   
 
 0.918
Rcas_1395
KEGG: rrs:RoseRS_2211 type IV secretory pathway VirB4 components-like protein.
  
  
 0.916
Rcas_2807
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1673 FHA domain containing protein.
  
 
 0.912
Rcas_3601
KEGG: mlo:mll3244 hypothetical protein.
  
 
 0.912
Rcas_0051
KEGG: rrs:RoseRS_3313 hypothetical protein.
   
   0.895
Rcas_3351
KEGG: rrs:RoseRS_4063 hypothetical protein.
   
   0.895
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.885
Rcas_3116
KEGG: rrs:RoseRS_2363 hypothetical protein.
  
  
 0.786
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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