STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3275PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1843 von Willebrand factor, type A. (419 aa)    
Predicted Functional Partners:
Rcas_0032
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0774 TPR repeat-containing protein.
 
     0.634
Rcas_2395
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_2769 FHA domain containing protein.
 
     0.633
Rcas_3274
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1999 tetratricopeptide TPR_2 repeat protein.
 
     0.629
Rcas_3820
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1890 hypothetical protein.
 
    0.610
Rcas_3987
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
 
     0.605
Rcas_0864
KEGG: rrs:RoseRS_0322 hypothetical protein.
 
     0.564
Rcas_3816
KEGG: rrs:RoseRS_1886 hypothetical protein.
  
     0.563
Rcas_3060
KEGG: rrs:RoseRS_2418 hypothetical protein.
 
     0.559
Rcas_3422
Putative FHA domain containing protein; KEGG: rrs:RoseRS_1616 hypothetical protein.
  
     0.553
Rcas_1973
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2703 hypothetical protein.
 
    0.544
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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