STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3352KEGG: rrs:RoseRS_4062 hypothetical protein. (123 aa)    
Predicted Functional Partners:
Rcas_3353
KEGG: rrs:RoseRS_4061 hypothetical protein.
 
     0.945
Rcas_3351
KEGG: rrs:RoseRS_4063 hypothetical protein.
 
     0.932
Rcas_1668
PFAM: protein of unknown function DUF95 transmembrane; ABC-2 type transporter; KEGG: rrs:RoseRS_1285 protein of unknown function DUF95, transmembrane.
  
    0.633
Rcas_1981
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: ptr:743860 hypothetical protein LOC743860.
  
     0.598
Rcas_3422
Putative FHA domain containing protein; KEGG: rrs:RoseRS_1616 hypothetical protein.
  
    0.578
Rcas_1816
Protein of unknown function DUF83; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
  
     0.543
Rcas_2217
KEGG: rrs:RoseRS_2439 hypothetical protein.
  
     0.505
Rcas_0999
KEGG: rrs:RoseRS_3820 hypothetical protein.
  
   
 0.504
Rcas_2164
PFAM: protein kinase; Pyrrolo-quinoline quinone; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1465 protein kinase.
  
 
 
 0.494
Rcas_0420
KEGG: rrs:RoseRS_4618 ABC-2 type transporter.
  
   
 0.492
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.