STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3353KEGG: rrs:RoseRS_4061 hypothetical protein. (120 aa)    
Predicted Functional Partners:
Rcas_3352
KEGG: rrs:RoseRS_4062 hypothetical protein.
 
     0.945
Rcas_3351
KEGG: rrs:RoseRS_4063 hypothetical protein.
 
     0.825
Rcas_4328
PFAM: major facilitator superfamily MFS_1; KEGG: bfs:BF2379 putative membrane protein.
 
     0.419
Rcas_3623
TIGRFAM: glutaredoxin-like domain protein; KEGG: rrs:RoseRS_3949 glutaredoxin-like domain protein.
  
     0.407
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.