STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3370PFAM: band 7 protein; KEGG: rrs:RoseRS_2221 band 7 protein. (306 aa)    
Predicted Functional Partners:
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.869
Rcas_3280
PFAM: peptidase M41; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1848 AAA ATPase, central domain protein; Belongs to the AAA ATPase family.
   
 0.869
Rcas_3371
PFAM: band 7 protein; KEGG: rrs:RoseRS_2222 band 7 protein.
       0.814
Rcas_3372
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2223 protein of unknown function DUF820.
       0.518
Rcas_1147
PFAM: peptidase M16 domain protein; KEGG: rrs:RoseRS_0397 peptidase M16 domain protein.
  
 0.495
Rcas_3297
KEGG: rrs:RoseRS_1864 hypothetical protein.
   
 0.495
Rcas_3545
PFAM: peptidase M16 domain protein; KEGG: rrs:RoseRS_2274 peptidase M16 domain protein.
  
 0.495
Rcas_3546
PFAM: peptidase M16 domain protein; KEGG: rrs:RoseRS_2273 peptidase M16 domain protein.
  
 0.495
Rcas_3603
KEGG: cme:CMF181C small GTP-binding protein of Rab family; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
   
 0.495
Rcas_2830
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: rrs:RoseRS_1651 AAA ATPase, central domain protein.
   
 0.483
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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