STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3418TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_1620 hypothetical protein. (453 aa)    
Predicted Functional Partners:
Rcas_3630
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: rrs:RoseRS_3956 SH3, type 3 domain protein.
  
     0.700
Rcas_1659
KEGG: rrs:RoseRS_1303 hypothetical protein.
  
     0.694
Rcas_3419
KEGG: rrs:RoseRS_1619 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
       0.686
Rcas_3420
KEGG: rrs:RoseRS_1618 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.538
Rcas_3422
Putative FHA domain containing protein; KEGG: rrs:RoseRS_1616 hypothetical protein.
 
     0.538
Rcas_1813
KEGG: rrs:RoseRS_2606 hypothetical protein.
  
     0.493
Rcas_1728
TIGRFAM: conserved repeat domain; KEGG: rrs:RoseRS_1002 conserved repeat domain.
  
     0.464
Rcas_0195
KEGG: rrs:RoseRS_0095 hypothetical protein.
  
     0.405
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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