STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3453PFAM: carbohydrate kinase FGGY; KEGG: rrs:RoseRS_2732 carbohydrate kinase, FGGY. (480 aa)    
Predicted Functional Partners:
rhaA
PFAM: L-rhamnose isomerase; KEGG: rrs:RoseRS_2730 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
 0.999
Rcas_2638
KEGG: rrs:RoseRS_1581 rhamnulose-1-phosphate aldolase.
 
 
 0.984
Rcas_3456
PFAM: protein of unknown function DUF718; KEGG: rrs:RoseRS_2729 protein of unknown function DUF718.
 
  
 0.960
Rcas_3454
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_2731 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 0.957
Rcas_1874
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rrs:RoseRS_2735 alpha-L-rhamnosidase.
 
  
 0.760
Rcas_2834
PFAM: RbsD or FucU transport; KEGG: rrs:RoseRS_1648 RbsD or FucU transport; Belongs to the RbsD / FucU family.
 
  
 0.547
Rcas_3457
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rrs:RoseRS_2724 transcriptional regulator, DeoR family.
 
  
 0.518
xylA
KEGG: rrs:RoseRS_2884 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
  
 0.493
Rcas_3879
PFAM: class II aldolase/adducin family protein; KEGG: rrs:RoseRS_0002 class II aldolase/adducin family protein.
  
  
 0.424
tal
Putative transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.402
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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