STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3550KEGG: rrs:RoseRS_2271 protein tyrosine/serine phosphatase. (243 aa)    
Predicted Functional Partners:
Rcas_3078
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rrs:RoseRS_2401 protein tyrosine phosphatase.
     
 0.914
Rcas_3741
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rrs:RoseRS_3252 protein tyrosine phosphatase.
     
 0.914
Rcas_0264
PFAM: regulator of chromosome condensation RCC1; KEGG: rrs:RoseRS_0421 regulator of chromosome condensation, RCC1.
   
 
 0.868
Rcas_2097
KEGG: rrs:RoseRS_2998 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.868
Rcas_2098
KEGG: rrs:RoseRS_2999 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.868
Rcas_2675
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_3011 von Willebrand factor, type A.
   
 
 0.868
Rcas_3383
KEGG: rrs:RoseRS_2231 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
    
 
 0.868
Rcas_0893
Sulphate transporter; PFAM: Rhodanese domain protein; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: rrs:RoseRS_4186 sulphate transporter.
   
   0.828
Rcas_1183
TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: rrs:RoseRS_0812 sulfate transporter.
   
   0.828
Rcas_2371
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: llm:llmg_0063 putative sulphate transporter.
   
   0.828
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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