STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3601KEGG: mlo:mll3244 hypothetical protein. (447 aa)    
Predicted Functional Partners:
Rcas_3603
KEGG: cme:CMF181C small GTP-binding protein of Rab family; TIGRFAM: small GTP-binding protein; PFAM: Miro domain protein; Ras family protein; SMART: Ras small GTPase, Ras type; Ras small GTPase, Rho type; Ras small GTPase, Rab type.
 
     0.955
Rcas_3209
KEGG: rrs:RoseRS_3908 hypothetical protein.
  
 
 0.912
Rcas_3600
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_0960 histidine kinase.
  
  
 0.841
Rcas_3602
KEGG: mlo:mll3246 hypothetical protein.
       0.812
Rcas_0555
PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
 
   
 0.781
Rcas_2574
SMART: LamG domain protein jellyroll fold domain protein; KEGG: ana:alr7304 similar to hlyA.
 
 
 
 0.781
Rcas_1741
KEGG: rrs:RoseRS_2129 hypothetical protein.
 
 
 0.757
Rcas_2294
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_2797 protein of unknown function DUF820.
  
     0.754
Rcas_2246
Hypothetical protein; KEGG: aav:Aave_2156 polymorphic outer membrane protein.
 
 
 
 0.751
Rcas_0614
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_0728 protein of unknown function DUF820.
  
     0.748
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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