STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Rcas_3618Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: rrs:RoseRS_1709 regulatory protein, ArsR. (122 aa)    
Predicted Functional Partners:
Rcas_3619
TIGRFAM: redox-active disulfide protein 2; KEGG: rrs:RoseRS_1708 redox-active disulfide protein 2.
     
 0.809
Rcas_3620
PFAM: permease; KEGG: rrs:RoseRS_1707 permease.
  
  
 0.618
Rcas_4052
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rrs:RoseRS_1213 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.515
Rcas_2316
Transcriptional regulator, ArsR family; PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein ArsR; KEGG: rrs:RoseRS_1228 protein tyrosine phosphatase.
 
  
 0.482
Rcas_2242
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rrs:RoseRS_2450 heavy metal translocating P-type ATPase.
 
  
 0.436
Rcas_0135
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rrs:RoseRS_0463 heavy metal translocating P-type ATPase.
 
  
 0.434
Rcas_3621
PFAM: protein of unknown function DUF81; KEGG: rrs:RoseRS_2089 protein of unknown function DUF81.
       0.434
Rcas_1110
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rrs:RoseRS_3774 heavy metal translocating P-type ATPase.
 
  
 0.418
Rcas_1934
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rrs:RoseRS_2964 NADH:flavin oxidoreductase/NADH oxidase.
 
   
 0.406
Rcas_2803
PFAM: regulatory protein ArsR; KEGG: ava:Ava_3702 transcriptional regulator, ArsR family.
  
     0.406
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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