STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3637PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rrs:RoseRS_4074 glycosyl transferase, group 1. (756 aa)    
Predicted Functional Partners:
Rcas_1348
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4265 glycosyl transferase, family 2.
  
  
 0.839
Rcas_3971
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rrs:RoseRS_1131 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.823
Rcas_3640
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_4616 glycosyl transferase family protein.
 
   0.788
Rcas_3643
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4089 ABC transporter related.
  
 
 0.735
Rcas_1030
PFAM: sugar transferase; KEGG: rrs:RoseRS_0402 sugar transferase.
  
  
 0.734
Rcas_1950
PFAM: sugar transferase; KEGG: rrs:RoseRS_2948 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.734
Rcas_3974
PFAM: sugar transferase; KEGG: rrs:RoseRS_1134 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.734
Rcas_4266
PFAM: sugar transferase; KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.734
Rcas_0393
PFAM: alpha amylase catalytic region; KEGG: rrs:RoseRS_0138 alpha amylase, catalytic region.
  
 0.683
Rcas_1349
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_4266 glycosyl transferase, group 1.
  
    0.667
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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