STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3643PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4089 ABC transporter related. (443 aa)    
Predicted Functional Partners:
Rcas_3650
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_4096 ABC-2 type transporter.
 
 0.998
Rcas_4139
PFAM: ABC-2 type transporter; KEGG: rrs:RoseRS_3367 ABC-2 type transporter.
 0.998
Rcas_0650
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0858 ABC transporter related.
  
  
 
0.913
Rcas_3640
PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_4616 glycosyl transferase family protein.
  
 
 0.787
Rcas_3642
Methyltransferase type 11; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: mxa:MXAN_4620 hypothetical protein.
     
 0.783
Rcas_3636
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_4073 glycosyl transferase, family 2.
 
 
 0.757
Rcas_3637
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rrs:RoseRS_4074 glycosyl transferase, group 1.
  
 
 0.735
Rcas_3641
Hypothetical protein; KEGG: tte:TTE0500 predicted glycosyltransferase.
  
 
 0.659
Rcas_3242
PFAM: phosphoribosyltransferase; KEGG: rrs:RoseRS_1875 amidophosphoribosyltransferase-like protein.
   
    0.641
Rcas_3638
KEGG: mxa:MXAN_4618 hypothetical protein.
       0.627
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.