STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3702PFAM: protein of unknown function DUF1568; KEGG: sus:Acid_5308 protein of unknown function DUF1568. (208 aa)    
Predicted Functional Partners:
Rcas_3701
Transcriptional regulator, SARP family; PFAM: TPR repeat-containing protein; transcriptional regulator domain protein; transcriptional activator domain; Tetratricopeptide TPR_4; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: gvi:glr1376 hypothetical protein.
       0.714
Rcas_1468
PFAM: transposase IS200-family protein; KEGG: rrs:RoseRS_0733 transposase IS200-family protein.
  
     0.457
Rcas_3878
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
      0.441
Rcas_3700
Hypothetical protein.
  
    0.437
Rcas_3859
PFAM: transposase IS4 family protein; KEGG: pna:Pnap_4408 transposase, IS4 family protein.
  
     0.412
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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