STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3703SMART: Dystroglycan-type cadherin domain protein; PA14-related domain protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein. (4022 aa)    
Predicted Functional Partners:
Rcas_0929
PFAM: Cna B domain protein; KEGG: rrs:RoseRS_4292 Cna B domain protein.
  
  
  0.961
Rcas_2197
TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; Cna B domain protein; KEGG: rrs:RoseRS_1068 conserved repeat domain.
  
  
  0.926
Rcas_2807
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1673 FHA domain containing protein.
     
  0.900
Rcas_2726
PFAM: Tetratricopeptide TPR_4; KEGG: rrs:RoseRS_2658 glycosyl transferase, family 39.
  
     0.730
Rcas_2727
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_2659 glycosyl transferase, family 39.
  
     0.728
Rcas_0820
PFAM: iron permease FTR1; KEGG: rrs:RoseRS_4468 iron permease FTR1.
  
     0.721
Rcas_0555
PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: rrs:RoseRS_3863 laminin G, sub domain 2.
  
     0.711
Rcas_1796
KEGG: rrs:RoseRS_2621 hypothetical protein.
  
     0.701
Rcas_3432
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_1610 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.683
Rcas_3210
KEGG: rrs:RoseRS_3907 hypothetical protein.
  
     0.682
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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