STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3726Putative transcriptional regulator; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: rrs:RoseRS_3238 putative transcriptional regulator. (212 aa)    
Predicted Functional Partners:
Rcas_3725
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.668
Rcas_1649
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_1293 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.543
Rcas_3895
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: rrs:RoseRS_0593 ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.543
Rcas_3901
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nca:Noca_1934 ferric-uptake regulator; Belongs to the Fur family.
  
    0.543
Rcas_3727
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KR domain protein; KEGG: rrs:RoseRS_3239 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.520
Rcas_3728
Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: rrs:RoseRS_3240 aminotransferase, class I and II.
       0.504
Rcas_3729
KEGG: rrs:RoseRS_3241 hypothetical protein.
       0.462
Rcas_3730
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_3242 glycosyl transferase, family 2.
       0.462
Rcas_2627
MlrC domain protein; PFAM: conserved hypothetical protein; MlrC domain protein; KEGG: gtn:GTNG_2000 hypothetical protein.
 
     0.446
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.