STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3760PFAM: protein of unknown function DUF403; KEGG: rrs:RoseRS_3275 protein of unknown function DUF403. (319 aa)    
Predicted Functional Partners:
Rcas_3761
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rrs:RoseRS_3276 protein of unknown function DUF404.
  
 0.994
Rcas_3759
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: rrs:RoseRS_3273 transglutaminase, N-terminal domain protein.
  
 0.983
Rcas_1801
PFAM: protein of unknown function DUF407; KEGG: rrs:RoseRS_2616 protein of unknown function DUF407.
 
  
 0.786
Rcas_2154
PFAM: protein of unknown function DUF407; KEGG: rrs:RoseRS_1453 hypothetical protein.
  
  
 0.750
Rcas_0245
PFAM: transglutaminase domain protein; KEGG: rrs:RoseRS_0315 transglutaminase domain protein.
 
  
 0.449
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.