STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3762Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rrs:RoseRS_3277 histidine kinase. (339 aa)    
Predicted Functional Partners:
Rcas_4227
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: DNA-binding response regulator.
 
  0.982
Rcas_3763
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_3278 two component transcriptional regulator, LuxR family.
 
   0.962
Rcas_0211
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_0691 two component transcriptional regulator, LuxR family.
 
   0.835
Rcas_1925
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_4503 two component transcriptional regulator, LuxR family.
 
   0.835
Rcas_2258
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; KEGG: rrs:RoseRS_1633 two component transcriptional regulator, LuxR family.
 
   0.835
Rcas_1228
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: rrs:RoseRS_0799 response regulator receiver protein.
 
   0.834
Rcas_1579
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: rrs:RoseRS_0938 two component transcriptional regulator, LuxR family.
 
   0.834
Rcas_3262
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1984 two component transcriptional regulator, LuxR family.
 
   0.834
Rcas_4428
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; Helix-turn-helix type 11 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_4323 two component transcriptional regulator, LuxR family.
 
   0.834
Rcas_1142
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_3421 two component transcriptional regulator, LuxR family.
 
   0.833
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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