STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3809KEGG: rrs:RoseRS_0968 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Rcas_3799
PFAM: nitrogen-fixing NifU domain protein; Rieske [2Fe-2S] domain protein; KEGG: mva:Mvan_2369 Rieske (2Fe-2S) domain protein.
 
  
 0.864
Rcas_3804
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: msm:MSMEG_2264 peptidase M52, hydrogen uptake protein.
 
     0.808
Rcas_3798
PFAM: NHL repeat containing protein; KEGG: msm:MSMEG_2269 NHL repeat protein.
 
 
   0.795
Rcas_3805
PFAM: nickel-dependent hydrogenase large subunit; KEGG: fra:Francci3_1076 hydrogen:quinone oxidoreductase.
 
     0.791
Rcas_3806
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: fra:Francci3_1077 hydrogenase (NiFe) small subunit (HydA).
 
     0.790
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
   
 0.636
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.630
Rcas_3207
PFAM: WD-40 repeat protein; KEGG: rrs:RoseRS_3910 WD-40 repeat protein.
  
 0.618
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.604
Rcas_0244
KEGG: rrs:RoseRS_0314 hypothetical protein.
  
 0.589
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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