STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3818PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rrs:RoseRS_1888 ATPase associated with various cellular activities, AAA_3. (334 aa)    
Predicted Functional Partners:
Rcas_3819
KEGG: rrs:RoseRS_1889 protein of unknown function DUF58.
 
  
 0.900
Rcas_3816
KEGG: rrs:RoseRS_1886 hypothetical protein.
 
     0.808
Rcas_1974
KEGG: rrs:RoseRS_2702 hypothetical protein.
 
  
 0.784
Rcas_3817
KEGG: rrs:RoseRS_1887 hypothetical protein.
       0.746
Rcas_3815
KEGG: rrs:RoseRS_1885 hypothetical protein.
       0.731
Rcas_3820
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1890 hypothetical protein.
 
  
 0.719
Rcas_3821
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1891 von Willebrand factor, type A.
 
     0.671
Rcas_0245
PFAM: transglutaminase domain protein; KEGG: rrs:RoseRS_0315 transglutaminase domain protein.
 
  
 0.572
Rcas_2888
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_3160 protein of unknown function DUF58.
 
  
 0.558
Rcas_2508
PFAM: protein of unknown function DUF58; KEGG: rrs:RoseRS_1836 protein of unknown function DUF58.
  
 0.551
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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