STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3859PFAM: transposase IS4 family protein; KEGG: pna:Pnap_4408 transposase, IS4 family protein. (358 aa)    
Predicted Functional Partners:
Rcas_3857
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_1936 anti-sigma-factor antagonist.
       0.566
Rcas_3858
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; histidine kinase HAMP region domain protein; KEGG: rrs:RoseRS_1935 anti-sigma-factor antagonist.
       0.566
Rcas_1604
KEGG: ter:Tery_1841 peptidase C14, caspase catalytic subunit P20.
  
     0.532
Rcas_2349
PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein.
  
     0.514
Rcas_2753
PFAM: FG-GAP repeat protein; KEGG: rrs:RoseRS_2511 FG-GAP repeat protein.
  
     0.500
Rcas_1516
Transcriptional modulator of MazE/toxin, MazF; KEGG: ana:alr0758 hypothetical protein.
  
     0.499
Rcas_2886
PFAM: protein of unknown function DUF820; KEGG: rba:RB8456 hypothetical protein.
  
     0.481
Rcas_0405
PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0444 transposase, IS4 family protein.
  
     0.476
Rcas_0411
PFAM: transposase IS4 family protein; KEGG: rrs:RoseRS_0444 transposase, IS4 family protein.
  
     0.476
Rcas_0685
PFAM: Radical SAM domain protein; KEGG: rrs:RoseRS_0147 radical SAM domain protein.
  
     0.461
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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