STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3880PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_0003 short-chain dehydrogenase/reductase SDR. (236 aa)    
Predicted Functional Partners:
Rcas_2879
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: rrs:RoseRS_2905 beta-ketoacyl synthase.
  
 
 0.829
Rcas_1156
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_0388 short-chain dehydrogenase/reductase SDR.
 
 
 0.777
Rcas_3066
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rrs:RoseRS_2412 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.732
Rcas_3879
PFAM: class II aldolase/adducin family protein; KEGG: rrs:RoseRS_0002 class II aldolase/adducin family protein.
  
  
 0.525
Rcas_4305
PFAM: sulfatase; KEGG: rrs:RoseRS_3340 sulfatase.
  
 
 0.523
Rcas_1491
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rrs:RoseRS_3469 malonyl CoA-acyl carrier protein transacylase.
  
 
 0.467
Rcas_0209
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: rrs:RoseRS_0693 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.458
Rcas_2930
PFAM: AMP-dependent synthetase and ligase; Enoyl-CoA hydratase/isomerase; Alcohol dehydrogenase GroES domain protein; KEGG: rrs:RoseRS_3202 AMP-dependent synthetase and ligase.
  
 0.442
Rcas_3878
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.436
Rcas_1874
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rrs:RoseRS_2735 alpha-L-rhamnosidase.
   
 
 0.417
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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