STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3901Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: nca:Noca_1934 ferric-uptake regulator; Belongs to the Fur family. (168 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.759
Rcas_3322
PFAM: iron dependent repressor; FeoA family protein; KEGG: rrs:RoseRS_3986 FeoA family protein.
  
  
 0.563
Rcas_3783
PFAM: CoA-binding domain protein; KEGG: rrs:RoseRS_1976 CoA-binding domain protein.
  
    0.549
Rcas_0303
Transcriptional regulator, TrmB; PFAM: regulatory protein MarR; regulatory protein DeoR; regulatory protein ArsR; transcriptional regulator TrmB; KEGG: rrs:RoseRS_0707 transcriptional regulator, TrmB.
  
    0.543
Rcas_3726
Putative transcriptional regulator; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: rrs:RoseRS_3238 putative transcriptional regulator.
  
    0.543
Rcas_1590
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1257 ABC transporter related.
  
  
 0.485
Rcas_1723
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related.
  
  
 0.485
Rcas_1903
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rrs:RoseRS_2985 glutamate synthase (ferredoxin).
     
 0.478
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.463
Rcas_3664
KEGG: rrs:RoseRS_4046 hypothetical protein.
  
  
 0.463
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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