STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3979TIGRFAM: LPPG domain containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rrs:RoseRS_1138 LPPG domain containing protein. (314 aa)    
Predicted Functional Partners:
Rcas_3977
TIGRFAM: F420-dependent oxidoreductase, putative; PFAM: protein of unknown function DUF129; KEGG: rrs:RoseRS_1136 F420-dependent oxidoreductase, putative.
 
 
 0.995
fbiD
Protein of unknown function DUF121; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
  
 0.990
Rcas_3981
PFAM: luciferase family protein; KEGG: rrs:RoseRS_1140 luciferase family protein.
 
   
 0.872
Rcas_3978
PFAM: nitroreductase; KEGG: rrs:RoseRS_1137 nitroreductase.
 
  
 0.846
Rcas_3982
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: rrs:RoseRS_1141 pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
 
     0.846
Rcas_3959
PFAM: luciferase family protein; KEGG: rrs:RoseRS_1121 luciferase family protein.
 
   
 0.817
Rcas_0241
PFAM: luciferase family protein; KEGG: mbo:Mb0815c hypothetical protein.
 
   
 0.789
Rcas_1303
PFAM: luciferase family protein; KEGG: rxy:Rxyl_0211 luciferase-like protein.
 
   
 0.786
Rcas_2498
KEGG: rrs:RoseRS_2718 hypothetical protein.
 
   
 0.778
Rcas_2560
PFAM: luciferase family protein; KEGG: rrs:RoseRS_2780 luciferase family protein.
 
   
 0.777
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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