STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4054PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2242 major facilitator superfamily MFS_1. (437 aa)    
Predicted Functional Partners:
Rcas_0999
KEGG: rrs:RoseRS_3820 hypothetical protein.
  
     0.652
Rcas_4248
PFAM: phospholipid/glycerol acyltransferase; KEGG: rrs:RoseRS_0012 phospholipid/glycerol acyltransferase.
  
     0.600
Rcas_1048
Hypothetical protein; KEGG: mgi:Mflv_5589 aminoglycoside nucleotidyltransferase.
  
     0.586
Rcas_4096
PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_4478 major facilitator superfamily MFS_1.
  
     0.491
Rcas_0829
PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_4478 major facilitator superfamily MFS_1.
  
     0.462
Rcas_1313
KEGG: gvi:gll2576 hypothetical protein.
  
     0.447
Rcas_4055
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rrs:RoseRS_2243 MATE efflux family protein.
  
  
 0.438
Rcas_2611
PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_2877 major facilitator superfamily MFS_1.
  
     0.427
Rcas_1635
KEGG: rrs:RoseRS_1316 nicotinic acid phosphoribosyltransferase-like protein.
  
    0.426
Rcas_2191
KEGG: rrs:RoseRS_1071 Na+/melibiose symporter and related transporter-like protein.
  
     0.414
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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