STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4065PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rrs:RoseRS_0603 methyltransferase type 11. (295 aa)    
Predicted Functional Partners:
Rcas_3865
KEGG: rrs:RoseRS_4300 hypothetical protein.
  
     0.716
Rcas_4414
KEGG: rrs:RoseRS_3443 metallophosphoesterase.
 
     0.682
Rcas_2671
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_3053 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.673
Rcas_4064
PFAM: transposase IS4 family protein; KEGG: pcu:pc1688 hypothetical protein.
       0.671
Rcas_2725
KEGG: rrs:RoseRS_2657 hypothetical protein.
  
     0.662
Rcas_3209
KEGG: rrs:RoseRS_3908 hypothetical protein.
  
  
 0.650
Rcas_0832
KEGG: rrs:RoseRS_4481 hypothetical protein.
  
    0.644
Rcas_4066
KEGG: rrs:RoseRS_1838 hypothetical protein.
  
    0.636
Rcas_0565
PFAM: band 7 protein; KEGG: rrs:RoseRS_3855 band 7 protein.
  
     0.634
Rcas_3116
KEGG: rrs:RoseRS_2363 hypothetical protein.
  
    0.628
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.