STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4143PFAM: phosphatidate cytidylyltransferase; KEGG: rrs:RoseRS_3363 phosphatidate cytidylyltransferase. (234 aa)    
Predicted Functional Partners:
Rcas_1824
PFAM: protein of unknown function DUF92 transmembrane; KEGG: rrs:RoseRS_2743 protein of unknown function DUF92, transmembrane.
     0.967
Rcas_0927
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_4293 tetratricopeptide TPR_2 repeat protein.
  
     0.561
Rcas_0190
KEGG: rrs:RoseRS_0367 hypothetical protein.
  
     0.524
Rcas_0191
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_0368 protein of unknown function DUF324.
  
     0.523
Rcas_0192
KEGG: rrs:RoseRS_0369 hydrolase of the HD superfamily (permuted catalytic motifs)-like protein.
  
     0.515
Rcas_0187
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_0364 protein of unknown function DUF324.
  
     0.500
Rcas_2771
PFAM: phospholipid/glycerol acyltransferase; KEGG: rrs:RoseRS_2831 phospholipid/glycerol acyltransferase.
     
  0.499
Rcas_0565
PFAM: band 7 protein; KEGG: rrs:RoseRS_3855 band 7 protein.
  
    0.471
Rcas_3875
KEGG: rrs:RoseRS_0167 nuclease (RecB family)-like protein.
  
     0.425
Rcas_0185
KEGG: rrs:RoseRS_0362 hypothetical protein.
  
     0.421
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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