Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rcas_4232TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; KEGG: mth:MTH328 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Rcas_4240
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_2589 CRISPR-associated RAMP protein, Cmr4 family.
   
 
 0.791
Rcas_4231
KEGG: tel:tll2424 unknown protein.
       0.773
Rcas_3923
KEGG: rrs:RoseRS_2591 protein of unknown function DUF324.
   
 
 0.716
Rcas_4242
PFAM: protein of unknown function DUF324; KEGG: rrs:RoseRS_2591 protein of unknown function DUF324.
   
 
 0.716
Rcas_4233
Hypothetical protein.
       0.503
Rcas_4241
TIGRFAM: CRISPR-associated protein Csx11; KEGG: rrs:RoseRS_2590 hypothetical protein.
   
   0.478
Rcas_0192
KEGG: rrs:RoseRS_0369 hydrolase of the HD superfamily (permuted catalytic motifs)-like protein.
   
   0.433
Rcas_1977
TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: csc:Csac_0075 CRISPR-associated protein, Csm1 family.
   
   0.433
Rcas_3294
KEGG: rrs:RoseRS_1861 hypothetical protein.
   
   0.433
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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