STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4262PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rrs:RoseRS_0168 aminotransferase, class V. (395 aa)    
Predicted Functional Partners:
Rcas_0314
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rrs:RoseRS_0719 nitrogen-fixing NifU domain protein.
 
 0.997
Rcas_0307
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: rrs:RoseRS_0711 SUF system FeS assembly protein, NifU family.
 
 0.996
Rcas_1186
PFAM: SirA family protein; KEGG: rrs:RoseRS_0815 SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.990
Rcas_0318
PFAM: UBA/THIF-type NAD/FAD binding protein; Rhodanese domain protein; MoeZ/MoeB domain protein; KEGG: rrs:RoseRS_0723 UBA/ThiF-type NAD/FAD binding protein.
   
 0.987
Rcas_0312
PFAM: Rhodanese domain protein; KEGG: rrs:RoseRS_0717 rhodanese domain protein.
  
 0.922
Rcas_0321
PFAM: Rhodanese domain protein; KEGG: rrs:RoseRS_0726 rhodanese domain protein.
  
 0.922
Rcas_2079
PFAM: Rhodanese domain protein; KEGG: rrs:RoseRS_1488 rhodanese domain protein.
  
 0.922
Rcas_0317
PFAM: thiamineS protein; KEGG: rrs:RoseRS_0722 thiamineS protein.
   
 0.919
Rcas_1758
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rrs:RoseRS_2111 iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
  
 0.885
Rcas_0491
KEGG: rrs:RoseRS_3647 hypothetical protein.
    
 
 0.863
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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