Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_4366PFAM: transport system permease protein; KEGG: rrs:RoseRS_3571 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (326 aa)    
Predicted Functional Partners:
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
 
 0.924
Rcas_4372
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3565 periplasmic binding protein.
 
 
 0.871
Rcas_2251
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3089 ABC transporter related.
 
 
 0.828
Rcas_4371
PFAM: transport system permease protein; KEGG: rrs:RoseRS_3566 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.675
Rcas_2937
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3091 periplasmic binding protein.
 
 
 0.667
Rcas_2939
KEGG: rrs:RoseRS_3093 periplasmic binding protein.
 
 
 0.635
Rcas_4367
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rrs:RoseRS_3570 antibiotic biosynthesis monooxygenase.
     
 0.581
Rcas_2248
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3086 periplasmic binding protein.
  
 
 0.571
Rcas_0879
KEGG: dvu:DVU2021 hypothetical protein.
  
 
 0.471
Rcas_1246
KEGG: ppd:Ppro_2108 hypothetical protein.
  
 
 0.471
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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