Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rcas_4367PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rrs:RoseRS_3570 antibiotic biosynthesis monooxygenase. (119 aa)    
Predicted Functional Partners:
Rcas_4368
KEGG: rrs:RoseRS_3569 hypothetical protein.
       0.671
Rcas_4369
PFAM: cytochrome c assembly protein; KEGG: rrs:RoseRS_3568 cytochrome c assembly protein.
       0.671
Rcas_4366
PFAM: transport system permease protein; KEGG: rrs:RoseRS_3571 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.581
Rcas_4371
PFAM: transport system permease protein; KEGG: rrs:RoseRS_3566 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.553
Rcas_4372
PFAM: periplasmic binding protein; KEGG: rrs:RoseRS_3565 periplasmic binding protein.
       0.514
hmuV
ABC transporter related; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
  
 0.489
Rcas_2684
TIGRFAM: CRISPR-associated protein Cas02710; KEGG: rrs:RoseRS_3021 hypothetical protein.
  
     0.444
Rcas_4370
KEGG: rrs:RoseRS_3567 hypothetical protein.
       0.411
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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