STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4397KEGG: rrs:RoseRS_2284 hypothetical protein. (475 aa)    
Predicted Functional Partners:
Rcas_4398
Endonuclease; KEGG: xoo:XOO0608 endonuclease.
    
 0.932
Rcas_4396
TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: mfa:Mfla_0410 integron integrase; Belongs to the 'phage' integrase family.
 
     0.631
Rcas_1171
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rrs:RoseRS_4284 DNA methylase N-4/N-6 domain protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.556
Rcas_1810
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tel:tlr1878 DNA-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.510
Rcas_4399
Hypothetical protein.
       0.457
Rcas_0616
PFAM: integrase family protein; KEGG: rrs:RoseRS_0840 integron integrase.
  
     0.453
Rcas_1608
PFAM: protein of unknown function DUF559; protein of unknown function DUF1156; KEGG: rrs:RoseRS_0239 protein of unknown function DUF1156.
 
     0.445
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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