STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4408PFAM: cobalt transport protein; KEGG: rrs:RoseRS_3451 cobalt transport protein. (260 aa)    
Predicted Functional Partners:
Rcas_4409
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3450 ABC transporter related.
 
 
 0.980
Rcas_0018
PFAM: BioY protein; KEGG: rrs:RoseRS_4523 BioY protein.
 
 0.978
Rcas_4124
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related.
 
 
 0.945
Rcas_4360
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rrs:RoseRS_0174 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
 
 0.942
Rcas_0646
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 0.937
Rcas_4407
KEGG: rrs:RoseRS_3452 signal transduction histidine kinase, LytS.
 
     0.935
Rcas_4263
KEGG: rrs:RoseRS_0169 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.934
Rcas_4125
PFAM: cobalt transport protein; KEGG: rrs:RoseRS_1922 cobalt transport protein.
  
  
 
0.927
Rcas_0638
KEGG: rrs:RoseRS_0571 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.708
Rcas_0640
KEGG: rrs:RoseRS_0569 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
  
 0.567
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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