STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4438KEGG: rrs:RoseRS_0756 hypothetical protein. (76 aa)    
Predicted Functional Partners:
Rcas_4437
PFAM: cytochrome c assembly protein; KEGG: rrs:RoseRS_0755 cytochrome c assembly protein.
       0.773
Rcas_4439
Conserved hypothetical protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
       0.693
Rcas_4436
PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: rrs:RoseRS_0754 cytochrome c-type biogenesis protein CcmB.
       0.596
Rcas_4435
KEGG: rrs:RoseRS_0753 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.462
Rcas_4440
PFAM: cytochrome c assembly protein; KEGG: rrs:RoseRS_0758 cytochrome c assembly protein.
       0.436
Rcas_4441
PFAM: heat shock protein DnaJ domain protein; KEGG: rrs:RoseRS_0759 heat shock protein DnaJ domain protein.
       0.436
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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