STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH30_06180ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)    
Predicted Functional Partners:
EH30_06185
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.992
EH30_09925
Two-component system sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.917
EH30_06195
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.881
EH30_00470
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.873
EH30_12710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.870
EH30_12180
RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.807
EH30_07640
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.771
EH30_10105
Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.759
EH30_13705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.730
EH30_00010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.719
Your Current Organism:
Erythrobacter sp. JL475
NCBI taxonomy Id: 383381
Other names: E. sp. JL475
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.