STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH30_13860Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)    
Predicted Functional Partners:
EH30_02970
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.973
EH30_13865
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.963
EH30_02975
50S ribosomal protein L27; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.957
EH30_07375
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.953
EH30_08060
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.952
EH30_08055
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.941
EH30_11625
50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.938
EH30_08030
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.933
EH30_14880
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.933
EH30_07900
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.927
Your Current Organism:
Erythrobacter sp. JL475
NCBI taxonomy Id: 383381
Other names: E. sp. JL475
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.