M2YTU8_PSEFD protein (Pseudocercospora fijiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M2YTU8_PSEFD

DRIM domain-containing protein. (2536 aa)

Predicted Functional Partners:

M2YGM5_PSEFD

0.999

M2YPT6_PSEFD

0.999

M2Z8E5_PSEFD

0.999

M3ALS8_PSEFD

0.999

M3AM01_PSEFD

0.999

M3AP35_PSEFD

0.999

NAT10

0.999

M3AXM9_PSEFD

0.999

N1Q6L8_PSEFD

0.999

N1Q6S7_PSEFD

0.999

Your Current Organism:

Pseudocercospora fijiensis

NCBI taxonomy Id: 383855
Other names: Cercospora fijiensis CIRAD86, Mycosphaerella fijiensis CIRAD86, P. fijiensis CIRAD86, Pseudocercospora fijiensis CIRAD86

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2YGM5_PSEFD	M2YPT6_PSEFD	M2YGM5	M2YPT6	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
M2YGM5_PSEFD	M2YTU8_PSEFD	M2YGM5	M2YTU8	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.999
M2YGM5_PSEFD	M2Z8E5_PSEFD	M2YGM5	M2Z8E5	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.999
M2YGM5_PSEFD	M3ALS8_PSEFD	M2YGM5	M3ALS8	WD_REPEATS_REGION domain-containing protein.	BP28CT domain-containing protein.	0.999
M2YGM5_PSEFD	M3AM01_PSEFD	M2YGM5	M3AM01	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
M2YGM5_PSEFD	M3AP35_PSEFD	M2YGM5	M3AP35	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
M2YGM5_PSEFD	M3AXM9_PSEFD	M2YGM5	M3AXM9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M2YGM5_PSEFD	N1Q6L8_PSEFD	M2YGM5	N1Q6L8	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.999
M2YGM5_PSEFD	N1Q6S7_PSEFD	M2YGM5	N1Q6S7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
M2YGM5_PSEFD	NAT10	M2YGM5	M3APJ7	WD_REPEATS_REGION domain-containing protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.993
M2YPT6_PSEFD	M2YGM5_PSEFD	M2YPT6	M2YGM5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.998
M2YPT6_PSEFD	M2YTU8_PSEFD	M2YPT6	M2YTU8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DRIM domain-containing protein.	0.999
M2YPT6_PSEFD	M2Z8E5_PSEFD	M2YPT6	M2Z8E5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Bms1-type G domain-containing protein.	0.999
M2YPT6_PSEFD	M3ALS8_PSEFD	M2YPT6	M3ALS8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	BP28CT domain-containing protein.	0.998
M2YPT6_PSEFD	M3AM01_PSEFD	M2YPT6	M3AM01	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 22.	0.998
M2YPT6_PSEFD	M3AP35_PSEFD	M2YPT6	M3AP35	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.999
M2YPT6_PSEFD	M3AXM9_PSEFD	M2YPT6	M3AXM9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.996
M2YPT6_PSEFD	N1Q6L8_PSEFD	M2YPT6	N1Q6L8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	CBF domain-containing protein.	0.999
M2YPT6_PSEFD	N1Q6S7_PSEFD	M2YPT6	N1Q6S7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD_REPEATS_REGION domain-containing protein.	0.999
M2YPT6_PSEFD	NAT10	M2YPT6	M3APJ7	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.995