STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M3A5Q5_PSEFDUncharacterized protein. (286 aa)    
Predicted Functional Partners:
N1Q822_PSEFD
Uncharacterized protein.
    
 0.617
M3AZS4_PSEFD
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.541
M2ZCW4_PSEFD
Uncharacterized protein.
    
 0.523
M2ZQT1_PSEFD
Uncharacterized protein.
    
 0.523
N1Q965_PSEFD
Uncharacterized protein.
    
 0.523
N1QCK1_PSEFD
Uncharacterized protein.
    
 0.523
M2YKV4_PSEFD
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.522
M3B655_PSEFD
RPOL9 domain-containing protein.
    
 0.522
N1Q5W5_PSEFD
RPOL4c domain-containing protein.
    
 0.522
N1QA12_PSEFD
RPOLD domain-containing protein.
    
 0.522
Your Current Organism:
Pseudocercospora fijiensis
NCBI taxonomy Id: 383855
Other names: Cercospora fijiensis CIRAD86, Mycosphaerella fijiensis CIRAD86, P. fijiensis CIRAD86, Pseudocercospora fijiensis CIRAD86
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