STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BUR1Serine/threonine protein kinase, CMGC family, CDC2/CDK subfamily. (565 aa)    
Predicted Functional Partners:
N1QBU1_PSEFD
Uncharacterized protein; Belongs to the cyclin family.
    
 0.997
N1QD26_PSEFD
Uncharacterized protein.
    
 0.976
M3B0A6_PSEFD
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.963
M3B8P4_PSEFD
Uncharacterized protein.
    
 0.929
N1QCG2_PSEFD
Uncharacterized protein.
    
 0.893
M3B532_PSEFD
CID domain-containing protein.
    
 
 0.814
M3B8X8_PSEFD
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.806
M2YT57_PSEFD
RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.
   
 0.791
M3APV7_PSEFD
Uncharacterized protein.
    
 0.788
M2ZND9_PSEFD
Uncharacterized protein.
    
 0.780
Your Current Organism:
Pseudocercospora fijiensis
NCBI taxonomy Id: 383855
Other names: Cercospora fijiensis CIRAD86, Mycosphaerella fijiensis CIRAD86, P. fijiensis CIRAD86, Pseudocercospora fijiensis CIRAD86
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