M3B5V2_PSEFD protein (Pseudocercospora fijiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M3B5V2_PSEFD

Uncharacterized protein. (179 aa)

Predicted Functional Partners:

M3B4N6_PSEFD

0.991

M2YXH9_PSEFD

0.987

N1QCK4_PSEFD

0.982

M2YP47_PSEFD

0.981

M3AX78_PSEFD

0.971

M3AZX7_PSEFD

0.970

M3B5S5_PSEFD

0.964

M2Z731_PSEFD

0.953

M2ZT30_PSEFD

0.948

M2ZFV9_PSEFD

0.912

Your Current Organism:

Pseudocercospora fijiensis

NCBI taxonomy Id: 383855
Other names: Cercospora fijiensis CIRAD86, Mycosphaerella fijiensis CIRAD86, P. fijiensis CIRAD86, Pseudocercospora fijiensis CIRAD86

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2YP47_PSEFD	M2YXH9_PSEFD	M2YP47	M2YXH9	Uncharacterized protein.	Enhancer of polycomb-like protein.	0.993
M2YP47_PSEFD	M2Z731_PSEFD	M2YP47	M2Z731	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.742
M2YP47_PSEFD	M2ZFV9_PSEFD	M2YP47	M2ZFV9	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.953
M2YP47_PSEFD	M2ZT30_PSEFD	M2YP47	M2ZT30	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.596
M2YP47_PSEFD	M3AX78_PSEFD	M2YP47	M3AX78	Uncharacterized protein.	Histone acetyltransferase SAGA, TRRAP/TRA1 component; Belongs to the PI3/PI4-kinase family.	0.986
M2YP47_PSEFD	M3AZX7_PSEFD	M2YP47	M3AZX7	Uncharacterized protein.	Uncharacterized protein.	0.831
M2YP47_PSEFD	M3B4N6_PSEFD	M2YP47	M3B4N6	Uncharacterized protein.	Myb-like domain-containing protein.	0.990
M2YP47_PSEFD	M3B5S5_PSEFD	M2YP47	M3B5S5	Uncharacterized protein.	YL1_C domain-containing protein.	0.803
M2YP47_PSEFD	M3B5V2_PSEFD	M2YP47	M3B5V2	Uncharacterized protein.	Uncharacterized protein.	0.981
M2YP47_PSEFD	N1QCK4_PSEFD	M2YP47	N1QCK4	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.767
M2YXH9_PSEFD	M2YP47_PSEFD	M2YXH9	M2YP47	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.993
M2YXH9_PSEFD	M2Z731_PSEFD	M2YXH9	M2Z731	Enhancer of polycomb-like protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.841
M2YXH9_PSEFD	M2ZFV9_PSEFD	M2YXH9	M2ZFV9	Enhancer of polycomb-like protein.	Uncharacterized protein; Belongs to the actin family.	0.987
M2YXH9_PSEFD	M2ZT30_PSEFD	M2YXH9	M2ZT30	Enhancer of polycomb-like protein.	Histone H2A; Belongs to the histone H2A family.	0.700
M2YXH9_PSEFD	M3AX78_PSEFD	M2YXH9	M3AX78	Enhancer of polycomb-like protein.	Histone acetyltransferase SAGA, TRRAP/TRA1 component; Belongs to the PI3/PI4-kinase family.	0.995
M2YXH9_PSEFD	M3AZX7_PSEFD	M2YXH9	M3AZX7	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.726
M2YXH9_PSEFD	M3B4N6_PSEFD	M2YXH9	M3B4N6	Enhancer of polycomb-like protein.	Myb-like domain-containing protein.	0.995
M2YXH9_PSEFD	M3B5S5_PSEFD	M2YXH9	M3B5S5	Enhancer of polycomb-like protein.	YL1_C domain-containing protein.	0.561
M2YXH9_PSEFD	M3B5V2_PSEFD	M2YXH9	M3B5V2	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.987
M2YXH9_PSEFD	N1QCK4_PSEFD	M2YXH9	N1QCK4	Enhancer of polycomb-like protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.868