Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
Pisl_0134TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: pab:PAB2077 hypothetical protein. (403 aa)    
Predicted Functional Partners:
Pisl_0150
PFAM: ATPase; KEGG: pai:PAE2540 hypothetical protein.
  
     0.565
Pisl_1975
PFAM: TENA/THI-4 domain protein; KEGG: pai:PAE0171 hypothetical protein.
  
     0.470
Pisl_0069
PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sto:ST1151 hypothetical 5-methylcytosine-specific restriction enzyme.
  
     0.401
Pisl_0968
Glycogen synthase (ADP-glucose/UDP-glucose); PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: pai:PAE3429 glycogen synthase (starch (bacterial glycogen) synthase), putative.
 
     0.401
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
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