STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pisl_1900PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: pai:PAE2445 ornithine cyclodeaminase (ArcB). (289 aa)    
Predicted Functional Partners:
Pisl_1901
DNA repair helicase RAD25; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pai:PAE2446 helicase, possible DNA repair.
       0.791
Pisl_1902
PFAM: protein of unknown function DUF790; KEGG: pai:PAE2447 hypothetical protein.
       0.791
Pisl_1899
KEGG: pai:PAE2442 hypothetical protein.
       0.719
Pisl_0897
Agmatinase; TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pai:PAE2260 agmatinase; Belongs to the arginase family.
 
  
 0.566
dapAL
PFAM: dihydrodipicolinate synthetase; KEGG: pai:PAE2915 dihydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.522
Pisl_1898
PFAM: Abortive infection protein; KEGG: pai:PAE2439 conserved within P.aerophilum.
       0.518
Pisl_1024
PFAM: FAD dependent oxidoreductase; KEGG: pai:PAE2310 proline dehydrogenase.
 
  
 0.502
Pisl_1767
KEGG: pai:PAE1917 pyrroline-5-carboxylate reductase.
 
  
 0.500
Pisl_1029
L-threonine ammonia-lyase; TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; amino acid-binding ACT domain protein; KEGG: pai:PAE2316 threonine dehydratase.
  
  
 0.482
Pisl_1238
Cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pai:PAE1051 cysteine synthase.
  
  
 0.476
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.