STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pisl_1920PFAM: Protein of unknown function DUF1626; KEGG: ape:APE1221 tropomyosin. (217 aa)    
Predicted Functional Partners:
Pisl_1919
KEGG: pai:PAE2518 hypothetical protein; Belongs to the UPF0248 family.
       0.678
Pisl_1921
PFAM: Uracil-DNA glycosylase superfamily; KEGG: pai:PAE1327 uracil-DNA glycosylase (Pa-UDGb).
       0.527
Pisl_1541
Hydrolase of the HD superfamily; KEGG: pai:PAE0109 hypothetical protein.
  
     0.465
Pisl_1924
PFAM: metallophosphoesterase; KEGG: pai:PAE3211 hypothetical protein.
 
     0.441
Pisl_1544
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: pai:PAE0114 hypothetical protein.
  
     0.431
Pisl_1947
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: afu:AF0668 hypothetical protein.
  
     0.427
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.