Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pisl_2003KEGG: pai:PAE0297 hypothetical protein. (311 aa)    
Predicted Functional Partners:
Pisl_2004
PFAM: protein of unknown function DUF343; KEGG: pai:PAE0284 hypothetical protein.
 
     0.709
Pisl_2005
PFAM: protein of unknown function DUF134; KEGG: tko:TK0562 hypothetical protein.
 
     0.699
Pisl_2006
Hypothetical protein.
       0.546
Pisl_2002
KEGG: pai:PAE0301 hypothetical protein.
       0.542
Pisl_1851
KEGG: pai:PAE2059 hypothetical protein.
  
     0.540
Pisl_0994
KEGG: pai:PAE3468 hypothetical protein.
  
     0.523
Pisl_1481
Hypothetical protein; KEGG: tko:TK0019 predicted ABC-type transport system, ATPase component.
  
   
 0.479
Pisl_1596
KEGG: pai:PAE1519 hypothetical protein.
  
     0.479
Pisl_0766
KEGG: pai:PAE3573 hypothetical protein.
  
     0.477
Pisl_1696
PFAM: peptidase M50; KEGG: pai:PAE1702 hypothetical protein.
  
     0.474
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
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